Found 7 records for the .SCF file extension name
There are 6 other file types using the SCF file extension:
.scf - ScoreMaker multimedia show
.scf - Lotus Symphony spelling checker configuration
.scf - Windows Explorer shell command file
.scf - Photo Soap 2 file
.scf - SimTown file
.scf - VIA setup configuration file
file extension SCF - DNA sequence file format
File extension SCF description:
SCF format files are used to store data from DNA sequencing instruments. Each file contains the data for a single reading and includes: its trace sample points, its called sequence, the positions of the bases relative to the trace sample points, and numerical estimates of the accuracy of each base. Comments and "private data" can also be stored.
Associated applications to file extension SCF:
Company / developer:
CubicDesign
DNA Baser
is an easy to use software package providing DNA sequence assembly functions (simple and batch), contig editing functions and chromatogram viewer/editor.
It provides automated end trimming (clipping), so there is no need to trim manually the low quality bases from the ends of the trace files before contig assembly. This saves considerable time, especially when assembling many DNA sequences.
DNA Baser offers a smart navigation system that takes you to the location of each sequence ambiguity / mutation with only a single click.
Features:
- Automatic cleaning (trimming) of the bad ends of chromatograms, based on the Quality Values (QV).
- Synchronized display between chromatograms and contig.
- Proprietary algorithm for correction of the ambiguous bases.
- A rapid navigation between mismatches.
- Chromatogram viewer and editor (ABI and SCF).
- Project map.
- Automatically save the contig to disk.
- Automatic primer detection and vector removal.
- Fast assembly algorithm.
- Conversion between several file formats.
- Embedded reverse complement tool.