Found one file extension association related to CASAVA and 1 file format developed specifically for use with CASAVA.
Platform, operating system: Microsoft Windows
Go to: CASAVA description
Developer: Illumina, Inc.
Developer / company: Illumina, Inc.
CASAVA package processes sequencing reads provided by RTA or OLB. CASAVA v1.8.2 supports Nextera dual indexing. CASAVA can generate the following data:
- Sample-specific reads from multiplexed flow cells
- Aligned reads
- SNP calls
- Indel calls
- Expression levels for exons, genes and splice junctions in the RNA Sequencing analysis
In addition, CASAVA automatically generates a range of statistics, such as mean depth and percentage chromosome coverage, to enable comparison with previous builds or other samples.
CASAVA analyzes sequencing reads in three stages:
- FASTQ file generation and demultiplexing
- Alignment to a reference genome
- Variant detection and counting
CASAVA works with the following file extensions:
Note: You can click on any file extension link from the list below, to view its detailed information. The list of extensions used or otherwise associated with the application may not be complete, because many common file extensions on our website, such as jpg (pictures) or txt (text files), can be opened by a large number of applications, or are too general file format. However most, if not all directly associated file extensions should be listed with its appropriate program. Although its likely, that some file extensions may be missing from the list of associated file extensions with the application, yet they can be opened, be part of, or otherwise be associated with the program.
CASAVA default file extension associations
Comparison table of actions that CASAVA can perform with its associated file type beta
This table might not contain all possible associated or supported file types or may contain incorrect data.
If you need more information please contact the developers of CASAVA (Illumina, Inc.), or check out their product website.
File type \ Action