Found 25 records for the .MOD file extension name
There are 24 other file types using the MOD file extension:
.mod - Digital music sound clip Amiga module format
.mod - MS DOS implementing support for Windows DLL's file
.mod - Tracker instrument file
.mod - MODel definitions (EPOC)
.mod - Modula-2 programming language source code
.mod - Module
.mod - Microsoft Multiplan spreadsheet
.mod - CATIA V4 Model File
.mod - Hard disk camera movie
.mod - Amiga and PC Tracker module
.mod - CADdy++ mechanical 2D/3D model data
.mod - Clarion for Modula-2 source code file
.mod - Connectivity memory model cell input file
.mod - Digital music sound clip
.mod - Femap file
.mod - Monarch file
.mod - Multiplan spreadsheet file
.mod - PDP-10 MODULA-2 compiler source
.mod - Peachtext database
.mod - PHP source code
.mod - ProModel Optimization Software Suite model
.mod - WinBoard import module
.mod - Microsoft Windows kernel module
.mod - JVC Everio digital video file
file extension MOD - Model file
File extension MOD description:
A model file created by a buildmodel, addfims, or modelfromalign. When many_files is not set (the default), buildmodel places the run statistics, parameter settings, and the frequency model into this file as well.
Associated applications to file extension MOD:
Sequence Alignment and Modeling system
Company / developer:
Richard Hughey - Kevin Karplus - Anders Krogh
The Sequence Alignment and Modeling system (SAM) is a collection of flexible software tools for creating, refining, and using linear hidden Markov models for biological sequence analysis. The model states can be viewed as representing the sequence of columns in a multiple sequence alignment, with provisions for arbitrary position-dependent insertions and deletions in each sequence. The models are trained on a family of protein or nucleic acid sequences using an expectation-maximization algorithm and a variety of algorithmic heuristics. A trained model can then be used to both generate multiple alignments and search databases for new members of the family.
SAM includes programs and scripts for the SAM-T99 method of remote homology detection. SAM-T99 is an iterative HMM search method for creating an HMM from a single protein sequence or seed alignment using iterative search of a protein database. The method is currently the most sensitive purely-sequence-based remote homology detection algorithm. SAM-T99 is based on successful methods created for the CASP2 and CASP3 protein structure prediction experiments.